LOCUS NC_009800 4643538 bp DNA circular BCT 14-SEP-2007
DEFINITION Escherichia coli HS, complete genome.
ACCESSION NC_009800
VERSION NC_009800.1 GI:157159467
KEYWORDS .
SOURCE Escherichia coli HS
ORGANISM Escherichia coli HS
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 4643538)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 2 (bases 1 to 4643538)
AUTHORS Rasko,D.A., Rosovitz,M., Kaper,J.B., Nataro,J.P., Myers,G.S.,
Seshadri,R., Cer,R.Z. and Ravel,J.
TITLE Direct Submission
JOURNAL Submitted (13-AUG-2007) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000802.
Source DNA and bacteria available from Jacques Ravel
(jravel@tigr.org).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 187870 | 188005 | + | 136 | 157159467 | EcHS_A4731 | - | t44 RNA |
| 223160 | 224701 | + | 1542 | 157159467 | EcHS_A4732 | - | 16S ribosomal RNA |
| 224770 | 224846 | + | 77 | 157159467 | EcHS_A4641 | - | 14 Ile tRNA |
| 224888 | 224965 | + | 78 | 157159467 | EcHS_A4642 | - | 02 Ala tRNA |
| 225139 | 228041 | + | 2903 | 157159467 | EcHS_A4733 | - | 23S ribosomal RNA |
| 228136 | 228251 | + | 116 | 157159467 | EcHS_A4734 | - | 5S ribosomal RNA |
| 228305 | 228383 | + | 79 | 157159467 | EcHS_A4643 | - | 06 Asp tRNA |
| 236529 | 236607 | + | 79 | 157159467 | EcHS_A4644 | - | 06 Asp tRNA |
| 291741 | 291816 | + | 76 | 157159467 | EcHS_A4645 | - | 12 Thr tRNA |
| 411322 | 411402 | + | 81 | 157159467 | EcHS_A4646 | - | Xaa tRNA |
| 542520 | 542619 | + | 100 | 157159467 | EcHS_A4735 | - | bacterial signal recognition particle RNA |
| 573269 | 573352 | + | 84 | 157159467 | EcHS_A4736 | - | sroB RNA |
| 624260 | 624338 | + | 79 | 157159467 | EcHS_A4647 | - | 11 Arg tRNA |
| 714829 | 714991 | - | 163 | 157159467 | EcHS_A4737 | - | sroC RNA |
| 725439 | 725515 | - | 77 | 157159467 | EcHS_A4648 | - | 05 Gln tRNA |
| 725551 | 725627 | - | 77 | 157159467 | EcHS_A4649 | - | 05 Gln tRNA |
| 725673 | 725751 | - | 79 | 157159467 | EcHS_A4650 | - | 16 Met tRNA |
| 725765 | 725841 | - | 77 | 157159467 | EcHS_A4651 | - | 05 Gln tRNA |
| 725875 | 725949 | - | 75 | 157159467 | EcHS_A4652 | - | 05 Gln tRNA |
| 725972 | 726058 | - | 87 | 157159467 | EcHS_A4653 | - | 15 Leu tRNA |
| 726065 | 726143 | - | 79 | 157159467 | EcHS_A4654 | - | 16 Met tRNA |
| 807407 | 807484 | + | 78 | 157159467 | EcHS_A4655 | - | 10 Lys tRNA |
| 807618 | 807695 | + | 78 | 157159467 | EcHS_A4656 | - | 13 Val tRNA |
| 807697 | 807772 | + | 76 | 157159467 | EcHS_A4657 | - | 10 Lys tRNA |
| 807824 | 807899 | + | 76 | 157159467 | EcHS_A4658 | - | 13 Val tRNA |
| 807903 | 807978 | + | 76 | 157159467 | EcHS_A4659 | - | 10 Lys tRNA |
| 808124 | 808201 | + | 78 | 157159467 | EcHS_A4660 | - | 10 Lys tRNA |
| 808333 | 808408 | + | 76 | 157159467 | EcHS_A4661 | - | 10 Lys tRNA |
| 948276 | 948354 | - | 79 | 157159467 | EcHS_A4738 | - | rybB RNA |
| 986231 | 986320 | - | 90 | 157159467 | EcHS_A4662 | - | 08 Ser tRNA |
| 1093238 | 1093327 | - | 90 | 157159467 | EcHS_A4663 | - | 08 Ser tRNA |
| 1160460 | 1160549 | - | 90 | 157159467 | EcHS_A4664 | - | 08 Ser tRNA |
| 1210269 | 1210437 | + | 169 | 157159467 | EcHS_A4740 | - | sraB RNA |
| 1279068 | 1279146 | + | 79 | 157159467 | EcHS_A4741 | - | C0299 RNA |
| 1335326 | 1335412 | - | 87 | 157159467 | EcHS_A4665 | - | 18 Tyr tRNA |
| 1335795 | 1335881 | - | 87 | 157159467 | EcHS_A4666 | - | 18 Tyr tRNA |
| 1451882 | 1452061 | + | 180 | 157159467 | EcHS_A4742 | - | IS061 RNA |
| 1455615 | 1455689 | + | 75 | 157159467 | EcHS_A4743 | - | C0343 RNA |
| 1460310 | 1460432 | + | 123 | 157159467 | EcHS_A4744 | - | IS063 RNA |
| 1768458 | 1768536 | + | 79 | 157159467 | EcHS_A4667 | - | 13 Val tRNA |
| 1768539 | 1768617 | + | 79 | 157159467 | EcHS_A4668 | - | 13 Val tRNA |
| 1786737 | 1786804 | + | 68 | 157159467 | EcHS_A4745 | - | rydB RNA |
| 1792396 | 1792503 | + | 108 | 157159467 | EcHS_A4746 | - | rprA RNA |
| 1906219 | 1906304 | - | 86 | 157159467 | EcHS_A4747 | - | sroD RNA |
| 1942043 | 1942291 | + | 249 | 157159467 | EcHS_A4748 | - | sraC/ryeA RNA |
| 1942081 | 1942180 | - | 100 | 157159467 | EcHS_A4749 | - | RyeB RNA |
| 1991910 | 1991987 | + | 78 | 157159467 | EcHS_A4750 | - | C0465 RNA |
| 2011442 | 2011528 | - | 87 | 157159467 | EcHS_A4669 | - | 15 Leu tRNA |
| 2011541 | 2011614 | - | 74 | 157159467 | EcHS_A4670 | - | 19 Cys tRNA |
| 2011669 | 2011744 | - | 76 | 157159467 | EcHS_A4671 | - | 01 Gly tRNA |
| 2044967 | 2045053 | - | 87 | 157159467 | EcHS_A4751 | - | DsrA RNA |
| 2082069 | 2082160 | - | 92 | 157159467 | EcHS_A4672 | - | 08 Ser tRNA |
| 2083150 | 2083227 | + | 78 | 157159467 | EcHS_A4673 | - | 07 Asn tRNA |
| 2096629 | 2096706 | - | 78 | 157159467 | EcHS_A4674 | - | 07 Asn tRNA |
| 2098453 | 2098530 | + | 78 | 157159467 | EcHS_A4675 | - | 07 Asn tRNA |
| 2100861 | 2100938 | + | 78 | 157159467 | EcHS_A4676 | - | 07 Asn tRNA |
| 2197516 | 2197664 | + | 149 | 157159467 | EcHS_A4752 | - | QUAD RNA |
| 2197851 | 2197993 | + | 143 | 157159467 | EcHS_A4753 | - | QUAD RNA |
| 2211353 | 2211438 | + | 86 | 157159467 | EcHS_A4754 | - | RyeE RNA |
| 2328388 | 2328466 | + | 79 | 157159467 | EcHS_A4677 | - | 03 Pro tRNA |
| 2354067 | 2354160 | + | 94 | 157159467 | EcHS_A4756 | - | micF RNA |
| 2507928 | 2508004 | + | 77 | 157159467 | EcHS_A4678 | - | 11 Arg tRNA |
| 2549442 | 2549519 | - | 78 | 157159467 | EcHS_A4679 | - | 02 Ala tRNA |
| 2549558 | 2549633 | - | 76 | 157159467 | EcHS_A4680 | - | 02 Ala tRNA |
| 2552333 | 2552408 | + | 76 | 157159467 | EcHS_A4681 | - | 13 Val tRNA |
| 2552452 | 2552529 | + | 78 | 157159467 | EcHS_A4682 | - | 13 Val tRNA |
| 2552574 | 2552651 | + | 78 | 157159467 | EcHS_A4683 | - | 13 Val tRNA |
| 2552655 | 2552730 | + | 76 | 157159467 | EcHS_A4684 | - | 10 Lys tRNA |
| 2678234 | 2678325 | - | 92 | 157159467 | EcHS_A4757 | - | sroE RNA |
| 2691154 | 2691362 | + | 209 | 157159467 | EcHS_A4758 | - | IS128 RNA |
| 2691494 | 2691797 | + | 304 | 157159467 | EcHS_A4759 | - | ryfA RNA |
| 2729526 | 2729674 | + | 149 | 157159467 | EcHS_A4760 | - | tke1 RNA |
| 2765684 | 2765799 | - | 116 | 157159467 | EcHS_A4761 | - | 5S ribosomal RNA |
| 2765894 | 2768797 | - | 2904 | 157159467 | EcHS_A4762 | - | 23S ribosomal RNA |
| 2768981 | 2769058 | - | 78 | 157159467 | EcHS_A4686 | - | 04 Glu tRNA |
| 2769229 | 2770770 | - | 1542 | 157159467 | EcHS_A4763 | - | 16S ribosomal RNA |
| 2795869 | 2796231 | + | 363 | 157159467 | EcHS_A4764 | - | tmRNA |
| 2803207 | 2803282 | - | 76 | 157159467 | EcHS_A4687 | - | 16 Met tRNA |
| 2832351 | 2832425 | + | 75 | 157159467 | EcHS_A4766 | - | sraD RNA |
| 2835200 | 2835278 | - | 79 | 157159467 | EcHS_A4688 | - | 11 Arg tRNA |
| 2835475 | 2835553 | - | 79 | 157159467 | EcHS_A4689 | - | 11 Arg tRNA |
| 2835614 | 2835692 | - | 79 | 157159467 | EcHS_A4690 | - | 11 Arg tRNA |
| 2835889 | 2835967 | - | 79 | 157159467 | EcHS_A4691 | - | 11 Arg tRNA |
| 2835969 | 2836063 | - | 95 | 157159467 | EcHS_A4692 | - | 08 Ser tRNA |
| 2942365 | 2942724 | - | 360 | 157159467 | EcHS_A4767 | - | CsrB/RsmB RNA family |
| 2960905 | 2961017 | + | 113 | 157159467 | EcHS_A4768 | - | gcvB RNA |
| 2965596 | 2965672 | + | 77 | 157159467 | EcHS_A4693 | - | 16 Met tRNA |
| 2965706 | 2965782 | + | 77 | 157159467 | EcHS_A4694 | - | 16 Met tRNA |
| 2965816 | 2965892 | + | 77 | 157159467 | EcHS_A4695 | - | 16 Met tRNA |
| 2965926 | 2966002 | + | 77 | 157159467 | EcHS_A4696 | - | 16 Met tRNA |
| 2994422 | 2994509 | - | 88 | 157159467 | EcHS_A4769 | - | sraE/rygA/rygB family RNA |
| 2994625 | 2994706 | - | 82 | 157159467 | EcHS_A4770 | - | sraE/rygA/rygB family RNA |
| 3026497 | 3026572 | - | 76 | 157159467 | EcHS_A4697 | - | 01 Gly tRNA |
| 3083494 | 3083676 | + | 183 | 157159467 | EcHS_A4771 | - | 6S / SsrS RNA |
| 3084326 | 3084476 | + | 151 | 157159467 | EcHS_A4772 | - | QUAD RNA |
| 3139284 | 3139361 | + | 78 | 157159467 | EcHS_A4698 | - | 17 Phe tRNA |
| 3158992 | 3159213 | + | 222 | 157159467 | EcHS_A4773 | - | C0719 RNA |
| 3238140 | 3238289 | - | 150 | 157159467 | EcHS_A4775 | - | QUAD RNA |
| 3238515 | 3238664 | - | 150 | 157159467 | EcHS_A4776 | - | QUAD RNA |
| 3259042 | 3259119 | + | 78 | 157159467 | EcHS_A4699 | - | 16 Met tRNA |
| 3281710 | 3281897 | + | 188 | 157159467 | EcHS_A4777 | - | SraF RNA |
| 3318852 | 3319152 | - | 301 | 157159467 | EcHS_A4778 | - | RNase P, class A |
| 3362151 | 3362324 | + | 174 | 157159467 | EcHS_A4779 | - | SraG RNA |
| 3362554 | 3362668 | - | 115 | 157159467 | EcHS_A4780 | - | Ribosomal S15 leader |
| 3369139 | 3369215 | - | 77 | 157159467 | EcHS_A4700 | - | 16 Met tRNA |
| 3372997 | 3373085 | - | 89 | 157159467 | EcHS_A4701 | - | 15 Leu tRNA |
| 3401504 | 3401611 | + | 108 | 157159467 | EcHS_A4781 | - | SraH RNA |
| 3467768 | 3467883 | - | 116 | 157159467 | EcHS_A4782 | - | 5S ribosomal RNA |
| 3467922 | 3467999 | - | 78 | 157159467 | EcHS_A4702 | - | 12 Thr tRNA |
| 3468013 | 3468128 | - | 116 | 157159467 | EcHS_A4783 | - | 5S ribosomal RNA |
| 3468223 | 3471126 | - | 2904 | 157159467 | EcHS_A4784 | - | 23S ribosomal RNA |
| 3471300 | 3471377 | - | 78 | 157159467 | EcHS_A4703 | - | 02 Ala tRNA |
| 3471419 | 3471495 | - | 77 | 157159467 | EcHS_A4704 | - | 14 Ile tRNA |
| 3471564 | 3473105 | - | 1542 | 157159467 | EcHS_A4785 | - | 16S ribosomal RNA |
| 3627962 | 3628051 | - | 90 | 157159467 | EcHS_A4787 | - | RyhB RNA |
| 3706172 | 3706285 | + | 114 | 157159467 | EcHS_A4788 | - | IS183 RNA |
| 3737918 | 3737996 | - | 79 | 157159467 | EcHS_A4705 | - | 03 Pro tRNA |
| 3865805 | 3865899 | + | 95 | 157159467 | EcHS_A4706 | - | Sec tRNA |
| 3970219 | 3971760 | + | 1542 | 157159467 | EcHS_A4789 | - | 16S ribosomal RNA |
| 3971845 | 3971922 | + | 78 | 157159467 | EcHS_A4707 | - | 04 Glu tRNA |
| 3972115 | 3975018 | + | 2904 | 157159467 | EcHS_A4790 | - | 23S ribosomal RNA |
| 3975113 | 3975228 | + | 116 | 157159467 | EcHS_A4791 | - | 5S ribosomal RNA |
| 3975282 | 3975360 | + | 79 | 157159467 | EcHS_A4708 | - | 06 Asp tRNA |
| 3975367 | 3975444 | + | 78 | 157159467 | EcHS_A4709 | - | 20 Trp tRNA |
| 4010788 | 4010864 | + | 77 | 157159467 | EcHS_A4710 | - | 11 Arg tRNA |
| 4010922 | 4010999 | + | 78 | 157159467 | EcHS_A4711 | - | 09 His tRNA |
| 4011018 | 4011106 | + | 89 | 157159467 | EcHS_A4712 | - | 15 Leu tRNA |
| 4011147 | 4011225 | + | 79 | 157159467 | EcHS_A4713 | - | 03 Pro tRNA |
| 4013276 | 4013447 | + | 172 | 157159467 | EcHS_A4792 | - | SraJ RNA |
| 4065789 | 4067330 | + | 1542 | 157159467 | EcHS_A4793 | - | 16S ribosomal RNA |
| 4067399 | 4067475 | + | 77 | 157159467 | EcHS_A4714 | - | 14 Ile tRNA |
| 4067517 | 4067594 | + | 78 | 157159467 | EcHS_A4715 | - | 02 Ala tRNA |
| 4067777 | 4070680 | + | 2904 | 157159467 | EcHS_A4794 | - | 23S ribosomal RNA |
| 4070869 | 4070984 | + | 116 | 157159467 | EcHS_A4795 | - | 5S ribosomal RNA |
| 4080070 | 4080188 | + | 119 | 157159467 | EcHS_A4796 | - | Spot 42 RNA |
| 4081217 | 4081470 | + | 254 | 157159467 | EcHS_A4797 | - | CsrC RNA family |
| 4187951 | 4188060 | - | 110 | 157159467 | EcHS_A4798 | - | oxyS RNA |
| 4196325 | 4197867 | + | 1543 | 157159467 | EcHS_A4800 | - | 16S ribosomal RNA |
| 4197952 | 4198029 | + | 78 | 157159467 | EcHS_A4716 | - | 04 Glu tRNA |
| 4198222 | 4201125 | + | 2904 | 157159467 | EcHS_A4801 | - | 23S ribosomal RNA |
| 4201221 | 4201336 | + | 116 | 157159467 | EcHS_A4802 | - | 5S ribosomal RNA |
| 4204969 | 4205046 | + | 78 | 157159467 | EcHS_A4717 | - | 12 Thr tRNA |
| 4205054 | 4205138 | + | 85 | 157159467 | EcHS_A4718 | - | 18 Tyr tRNA |
| 4205255 | 4205329 | + | 75 | 157159467 | EcHS_A4719 | - | 01 Gly tRNA |
| 4205335 | 4205412 | + | 78 | 157159467 | EcHS_A4720 | - | 12 Thr tRNA |
| 4219909 | 4220069 | - | 161 | 157159467 | EcHS_A4803 | - | sroH RNA |
| 4237708 | 4239249 | + | 1542 | 157159467 | EcHS_A4805 | - | 16S ribosomal RNA |
| 4239334 | 4239411 | + | 78 | 157159467 | EcHS_A4721 | - | 04 Glu tRNA |
| 4239604 | 4242507 | + | 2904 | 157159467 | EcHS_A4806 | - | 23S ribosomal RNA |
| 4242603 | 4242718 | + | 116 | 157159467 | EcHS_A4807 | - | 5S ribosomal RNA |
| 4386573 | 4386650 | - | 78 | 157159467 | EcHS_A4722 | - | 17 Phe tRNA |
| 4417101 | 4417176 | + | 76 | 157159467 | EcHS_A4723 | - | 01 Gly tRNA |
| 4417212 | 4417289 | + | 78 | 157159467 | EcHS_A4724 | - | 01 Gly tRNA |
| 4417323 | 4417400 | + | 78 | 157159467 | EcHS_A4725 | - | 01 Gly tRNA |
| 4532533 | 4532619 | + | 87 | 157159467 | EcHS_A4726 | - | 15 Leu tRNA |
| 4609393 | 4609481 | - | 89 | 157159467 | EcHS_A4727 | - | 15 Leu tRNA |
| 4609515 | 4609601 | - | 87 | 157159467 | EcHS_A4728 | - | 15 Leu tRNA |
| 4609629 | 4609717 | - | 89 | 157159467 | EcHS_A4729 | - | 15 Leu tRNA |